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Cannot Connect to Hoffman2 (8 articles)

SSH connection breaks - packet_write_wait/Broken pipe
Wednesday, November 20, 2019 broken pipe, ipqos, packet_write_wait, ssh
Why can't I connect to the Hoffman2 cluster from mednet or UCLAHealthSecure?
Updated: Monday, October 28, 2019 mednet, virtual private network, vpn
Connecting to the campus VPN
Updated: Monday, October 28, 2019 virtual private network, vpn
My ssh connection drops after [n] minutes
Updated: Wednesday, November 20, 2019 connection, drops, problem, ssh
Do you support NX, VNC, or other graphical interfaces?
Updated: Monday, October 28, 2019

User Accounts (1 articles)

I forgot my password - how do I change or reset it?
Updated: Monday, October 28, 2019

Other (1 articles)

Registering as a new sponsor on the Hoffman2 Cluster
Updated: Monday, October 28, 2019

Applications, Compilers, and Libraries

Code/Programming/Scripts (2 articles)

After loading Intel 13.cs module, why is mpicc/mpicxx/mpif90 still not using Intel compiler?
Updated: Monday, October 28, 2019
How to load in your environment the previously used Intel compiler
Updated: Monday, October 28, 2019

Licenses (2 articles)

Running Ansys on a local Widows machine while checking out a license on the Hoffman2 cluster (YOU NEED A VALID LICENSE INSTALLED ON THE CLUSTER - WE HAVE NO PUBLIC LICENSES FOR ANSYS)
Updated: Monday, October 28, 2019
ssh port forwarding from windows computers
Updated: Monday, October 28, 2019

Software Installation Help (Project/Home directory) (6 articles)

Installing Gossamer bioinformatics suite in your $HOME
Thursday, December 5, 2019 cmake, electus, goss, gossamer, gossple, xenome
Installing HTSeq in python 2
Updated: Monday, October 28, 2019
How to build angsd on Hoffman2
Updated: Tuesday, October 29, 2019 angsd, angsd htslib, htslib
Python environments on Hoffman2
Updated: Monday, October 28, 2019
How to install/update pysam with python version 2.7
Updated: Monday, October 28, 2019

Other (1 articles)

Qiime/Qiime2 on the Hoffman2 cluster
Updated: Monday, October 28, 2019

Job Errors/Job Scheduler

How to Submit a Job (6 articles)

qsub command not found
Updated: Monday, October 28, 2019
Requesting the appropriate amount of resources for jobs on the Hoffman2 cluster
Updated: Monday, October 28, 2019
Why cannot I submit too many individual jobs?
Updated: Monday, October 28, 2019
How do I request large memory to run multi-threaded (single node) program?
Updated: Monday, October 28, 2019
How do I request large memory to run sequential (1-core) program?
Updated: Monday, October 28, 2019

Job Not Starting (2 articles)

Why is my job still waiting in the queue?
Updated: Monday, October 28, 2019 job scheduler, sge, uge, wait
Why my highp job did not start in 24 hours?
Updated: Monday, October 28, 2019

Job Status (2 articles)

I have a lot of jobs in error state E. How do I find out what the problem is?
Updated: Monday, October 28, 2019
An OIT/IDRE consultant sent me an email about a lot of left over jobs running under my userid. How do I delete them?
Updated: Monday, October 28, 2019

Other (2 articles)

$TMPDIR for interactive job on Hoffman2
Updated: Monday, October 28, 2019
How many cores does my job get with "exclusive"?
Updated: Monday, October 28, 2019

Node and Storage Purchases

Node and Storage Purchases (3 articles)

Purchasing HPC Storage on the Hoffman2 Cluster
Updated: Monday, October 28, 2019
Purchasing nodes on the Hoffman2 Cluster
Updated: Monday, October 28, 2019
Buying HPC storage on the Hoffman2 cluster
Updated: Monday, October 28, 2019

Other (1 articles)

Hoffman2 HPC Storage: Home, project and nobackup directories
Updated: Monday, October 28, 2019 directories, directory, home, hpc, nobackup, project, storage

Storage and Filesystems

Access / Permissions / Quotas (1 articles)

Data Sharing on Hoffman2
Updated: Monday, October 28, 2019

Cloud Storage (AWS, Box, etc.) (1 articles)

Can I use Dropbox on Hoffman2?
Updated: Monday, October 28, 2019

File Transfer and Globus (2 articles)

High-speed file transfer with Globus
Updated: Monday, October 28, 2019
Globus: Your task is currently receiving the error: ENDPOINT_TOO_BUSY
Updated: Monday, October 28, 2019

General Requests (3 articles)

I deleted a file in my home directory. How can I recover it?
Updated: Monday, October 28, 2019
/u/scratch file retention policy
Updated: Monday, October 28, 2019
Hoffman2 Cluster Filesystem Classifications
Updated: Monday, October 28, 2019

Other

Policies (1 articles)

How can I acknowledge Hoffman2 Shared Cluster in my presentations or publications?
Updated: Monday, October 28, 2019

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