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Installing HTSeq in python 2

Creation date: 8/26/2019 8:22 AM    Updated: 10/28/2019 9:51 AM
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1. Bash (or sh-based) shells:

(qrsh)
module load python/2.7.16
export CPPFLAGS='-I/u/local/apps/xz/5.2.3/include -I/u/local/apps/zlib/1.2.8/gcc-4.4.7/include'
export LDFLAGS='-L/u/local/apps/xz/5.2.3/lib -L/u/local/apps/zlib/1.2.8/gcc-4.4.7/lib'
pip install HTSeq --user


to use the code you could add these lines to the end of your $HOME/.bashrc file:


module load python/2.7.16
module load zlib
module load xz
export PATH=$HOME/.local/bin:$PATH


or issue them before using the HTSeq package.

2.  csh-based shells (csh, tcsh):


(qrsh)
module load python/2.7.16
setenv CPPFLAGS '-I/u/local/apps/xz/5.2.3/include -I/u/local/apps/zlib/1.2.8/gcc-4.4.7/include'
setenv LDFLAGS '-L/u/local/apps/xz/5.2.3/lib -L/u/local/apps/zlib/1.2.8/gcc-4.4.7/lib'
pip install HTSeq --user


to use the code you could add these lines to the end of your $HOME/.csh file:


module load python/2.7.16
module load zlib
module load xz
setenv PATH $HOME/.local/bin:$PATH


or issue them before using the HTSeq package.

-- RD 2019AUG26
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