Installing HTSeq in python 2

1. Bash (or sh-based) shells:




(qrsh)
module load python/2.7.16
export CPPFLAGS='-I/u/local/apps/xz/5.2.3/include -I/u/local/apps/zlib/1.2.8/gcc-4.4.7/include'
export LDFLAGS='-L/u/local/apps/xz/5.2.3/lib -L/u/local/apps/zlib/1.2.8/gcc-4.4.7/lib'


pip install HTSeq --user

to use the code you could add these lines to the end of your $HOME/.bashrc file:

module load python/2.7.16
module load zlib 


module load xz
export PATH=$HOME/.local/bin:$PATH

or issue them before using the HTSeq package.

2. csh-based shells (csh, tcsh):

(qrsh)
module load python/2.7.16
setenv CPPFLAGS '-I/u/local/apps/xz/5.2.3/include -I/u/local/apps/zlib/1.2.8/gcc-4.4.7/include'
setenv LDFLAGS '-L/u/local/apps/xz/5.2.3/lib -L/u/local/apps/zlib/1.2.8/gcc-4.4.7/lib'


pip install HTSeq --user

to use the code you could add these lines to the end of your $HOME/.csh file:

module load python/2.7.16
module load zlib 


module load xz
setenv PATH $HOME/.local/bin:$PATH

or issue them before using the HTSeq package.

-- RD 2019AUG26

Creation date: 8/26/2019 8:22 AM Updated: 10/28/2019 9:51 AM