Installation of package igraph in R
R version 4.4.0:
qrsh -l h_data=10G
module load gcc/10.2.0; module load R/4.4.0; module load glpk
wget https://ftp.osuosl.org/pub/cran/src/contrib/igraph_2.0.3.tar.gz
tar xvf igraph_2.0.3.tar.gz
cd igraph; patch < /u/local/apps/igraph/HOW_TO_INSTALL_IN_R/configure.patch
cd ..
if [ ! -d $R_LIBS_USER ] ; then mkdir -p $R_LIBS_USER ; fi # assuming sh/bash-based shell
# perform installation of dependencies (installation of igraph will fail)
R -e "install.packages('igraph',lib=Sys.getenv('R_LIBS_USER'),dependencies=TRUE, repos='https://ftp.osuosl.org/pub/cran/')"
# now install patched version of igraph:
R CMD INSTALL igraph
# you can then remove the igraph directoryR version 4.4.1:
qrsh -l h_data=10G
module load gcc/10.2.0; module load R/4.4.1; module load glpk
wget https://ftp.osuosl.org/pub/cran/src/contrib/igraph_2.0.3.tar.gz
tar xvf igraph_2.0.3.tar.gz
cd igraph; patch < /u/local/apps/igraph/HOW_TO_INSTALL_IN_R/configure.patch
cd ..
if [ ! -d $R_LIBS_USER ] ; then mkdir -p $R_LIBS_USER ; fi # assuming sh/bash-based shell
# perform installation of dependencies (installation of igraph will fail)
R -e "install.packages('igraph',lib=Sys.getenv('R_LIBS_USER'),dependencies=TRUE, repos='https://ftp.osuosl.org/pub/cran/')"
# now install patched version of igraph:
R CMD INSTALL igraph
# you can then remove the igraph directory